IL_7OH3_077

3D structure

PDB id

7OH3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nog1-TAP associated immature ribosomal particle population B from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GAG*UCU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OH3_077 not in the Motif Atlas

Geometric match to IL_3R1C_018

Geometric discrepancy: 0.2339

The information below is about IL_3R1C_018

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.6

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

51

Unit IDs

7OH3|1|1|G|2251
7OH3|1|1|A|2252
7OH3|1|1|G|2253
*
7OH3|1|1|U|2264
7OH3|1|1|C|2265
7OH3|1|1|U|2266

Current chains

Chain 1

25S rRNA

Nearby chains

Chain m

Nucleolar GTP-binding protein 2

Chain v

Ribosome biogenesis protein RPF2

Chain x

Ribosome assembly protein 4