IL_7OH3_130

3D structure

PDB id

7OH3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nog1-TAP associated immature ribosomal particle population B from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GAUAUG*CAUGC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OH3_130 not in the Motif Atlas

Geometric match to IL_6CZR_167

Geometric discrepancy: 0.3307

The information below is about IL_6CZR_167

Detailed Annotation

Partly complementary

Broad Annotation

Partly complementary

Motif group

IL_49751.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

18

Unit IDs

7OH3|1|1|G|1618
7OH3|1|1|A|1619
7OH3|1|1|U|1620
7OH3|1|1|A|1621
7OH3|1|1|U|1622
7OH3|1|1|G|1623
*
7OH3|1|1|C|1822
7OH3|1|1|A|1823
7OH3|1|1|U|1824
7OH3|1|1|G|1825
7OH3|1|1|C|1826

Current chains

Chain 1

25S rRNA

Nearby chains

Chain 2

5.8S ribosomal RNA; 5.8S rRNA

Chain g

60S ribosomal protein L34-A

Chain k

60S ribosomal protein L38