IL_7OHP_034

3D structure

PDB id

7OHP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL25 expression shut down, population A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GCUCAAG*CUCAAGC

Length

14 nucleotides

Bulged bases

7OHP|1|1|C|1316, 7OHP|1|1|A|1318

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7OHP|1|1|G|1186
7OHP|1|1|C|1187
7OHP|1|1|U|1188
7OHP|1|1|C|1189
7OHP|1|1|A|1190
7OHP|1|1|A|1193
7OHP|1|1|G|1194
*
7OHP|1|1|C|1314
7OHP|1|1|U|1315
7OHP|1|1|C|1316
7OHP|1|1|A|1317
7OHP|1|1|A|1318
7OHP|1|1|G|1319
7OHP|1|1|C|1320

Current chains

Chain 1

25S rRNA

Nearby chains

Chain H

60S ribosomal protein L9-A

Chain M

60S ribosomal protein L14-A

Chain O

60S ribosomal protein L16-A

Chain S

60S ribosomal protein L20-A

Chain r

Ribosome biogenesis protein NSA2