IL_7OHP_035

3D structure

PDB id

7OHP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL25 expression shut down, population A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GACAAAAG*CUGGGCGC

Length

16 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7OHP|1|1|G|1194
7OHP|1|1|A|1195
7OHP|1|1|C|1201
7OHP|1|1|A|1202
7OHP|1|1|A|1203
7OHP|1|1|A|1204
7OHP|1|1|A|1205
7OHP|1|1|G|1206
*
7OHP|1|1|C|1298
7OHP|1|1|U|1299
7OHP|1|1|G|1300
7OHP|1|1|G|1310
7OHP|1|1|G|1311
7OHP|1|1|C|1312
7OHP|1|1|G|1313
7OHP|1|1|C|1314

Current chains

Chain 1

25S rRNA

Nearby chains

Chain O

60S ribosomal protein L16-A

Chain W

Ribosome assembly factor MRT4

Chain f

60S ribosomal protein L33-A

Chain r

Ribosome biogenesis protein NSA2