IL_7OHP_059

3D structure

PDB id

7OHP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL25 expression shut down, population A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUA*UUAC

Length

7 nucleotides

Bulged bases

7OHP|1|1|A|3375

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OHP_059 not in the Motif Atlas

Geometric match to IL_4PKD_001

Geometric discrepancy: 0.2363

The information below is about IL_4PKD_001

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

7OHP|1|1|G|3328
7OHP|1|1|U|3329
7OHP|1|1|A|3330
*
7OHP|1|1|U|3373
7OHP|1|1|U|3374
7OHP|1|1|A|3375
7OHP|1|1|C|3378

Current chains

Chain 1

25S rRNA

Nearby chains

Chain B

60S ribosomal protein L3