IL_7OHQ_053

3D structure

PDB id

7OHQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nog1-TAP associated immature ribosomal particle population C from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UCAAC*GGA

Length

8 nucleotides

Bulged bases

7OHQ|1|1|G|1514

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OHQ_053 not in the Motif Atlas

Geometric match to IL_4V9F_051

Geometric discrepancy: 0.3292

The information below is about IL_4V9F_051

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.13

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

23

Unit IDs

7OHQ|1|1|U|1501
7OHQ|1|1|C|1502
7OHQ|1|1|A|1503
7OHQ|1|1|A|1504
7OHQ|1|1|C|1505
*
7OHQ|1|1|G|1513
7OHQ|1|1|G|1514
7OHQ|1|1|A|1515

Current chains

Chain 1

25S rRNA

Nearby chains

Chain P

60S ribosomal protein L17-A

Chain R

60S ribosomal protein L19-A

Chain l

60S ribosomal protein L39