IL_7OHQ_133

3D structure

PDB id

7OHQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nog1-TAP associated immature ribosomal particle population C from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUUG*CAC

Length

7 nucleotides

Bulged bases

7OHQ|1|1|U|2410

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OHQ_133 not in the Motif Atlas

Geometric match to IL_4V88_455

Geometric discrepancy: 0.2979

The information below is about IL_4V88_455

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

7OHQ|1|1|G|2409
7OHQ|1|1|U|2410
7OHQ|1|1|U|2411
7OHQ|1|1|G|2412
*
7OHQ|1|1|C|2810
7OHQ|1|1|A|2811
7OHQ|1|1|C|2812

Current chains

Chain 1

25S rRNA

Nearby chains

Chain C

60S ribosomal protein L4-A

Chain m

Nucleolar GTP-binding protein 2