IL_7OHR_033

3D structure

PDB id

7OHR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nog1-TAP associated immature ribosomal particle population E from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

4.72 Å

Loop

Sequence

AUUU*AACU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OHR_033 not in the Motif Atlas

Geometric match to IL_4WF9_109

Geometric discrepancy: 0.2292

The information below is about IL_4WF9_109

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

7OHR|1|1|A|1120
7OHR|1|1|U|1121
7OHR|1|1|U|1122
7OHR|1|1|U|1123
*
7OHR|1|1|A|1135
7OHR|1|1|A|1136
7OHR|1|1|C|1137
7OHR|1|1|U|1138

Current chains

Chain 1

25S rRNA

Nearby chains

Chain F

60S ribosomal protein L7-A

Chain J

rRNA-processing protein EBP2

Chain s

Nuclear GTP-binding protein NUG1