IL_7OHR_055

3D structure

PDB id

7OHR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nog1-TAP associated immature ribosomal particle population E from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

4.72 Å

Loop

Sequence

GGC*GAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OHR_055 not in the Motif Atlas

Homologous match to IL_8C3A_074

Geometric discrepancy: 0.2433

The information below is about IL_8C3A_074

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

7OHR|1|1|G|1661
7OHR|1|1|G|1662
7OHR|1|1|C|1663
*
7OHR|1|1|G|1786
7OHR|1|1|A|1787
7OHR|1|1|C|1788

Current chains

Chain 1

25S rRNA

Nearby chains

Chain I

Nucleolar complex-associated protein 3

Chain R

60S ribosomal protein L19-A

Chain g

60S ribosomal protein L34-A