IL_7OHR_071

3D structure

PDB id

7OHR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nog1-TAP associated immature ribosomal particle population E from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

4.72 Å

Loop

Sequence

UA*UAAG

Length

6 nucleotides

Bulged bases

7OHR|1|1|A|2911

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OHR_071 not in the Motif Atlas

Geometric match to IL_4V9F_089

Geometric discrepancy: 0.1621

The information below is about IL_4V9F_089

Detailed Annotation

Major groove platform with intercalation

Broad Annotation

Major groove platform

Motif group

IL_94991.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

15

Unit IDs

7OHR|1|1|U|2891
7OHR|1|1|A|2892
*
7OHR|1|1|U|2909
7OHR|1|1|A|2910
7OHR|1|1|A|2911
7OHR|1|1|G|2912

Current chains

Chain 1

25S rRNA

Nearby chains

Chain H

60S ribosomal protein L9-A

Chain O

60S ribosomal protein L16-A

Chain r

Ribosome biogenesis protein NSA2