IL_7OHR_080

3D structure

PDB id

7OHR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nog1-TAP associated immature ribosomal particle population E from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

4.72 Å

Loop

Sequence

UCUUUGC*GA

Length

9 nucleotides

Bulged bases

7OHR|1|1|U|3155, 7OHR|1|1|U|3156

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OHR_080 not in the Motif Atlas

Geometric match to IL_5TBW_101

Geometric discrepancy: 0.2479

The information below is about IL_5TBW_101

Detailed Annotation

Single stack bend

Broad Annotation

Single stack bend

Motif group

IL_39137.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

3

Unit IDs

7OHR|1|1|U|3153
7OHR|1|1|C|3154
7OHR|1|1|U|3155
7OHR|1|1|U|3156
7OHR|1|1|U|3157
7OHR|1|1|G|3158
7OHR|1|1|C|3159
*
7OHR|1|1|G|3291
7OHR|1|1|A|3292

Current chains

Chain 1

25S rRNA

Nearby chains

Chain B

60S ribosomal protein L3