IL_7OHR_103

3D structure

PDB id

7OHR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nog1-TAP associated immature ribosomal particle population E from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

4.72 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

7OHR|1|1|A|1263

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OHR_103 not in the Motif Atlas

Homologous match to IL_8P9A_284

Geometric discrepancy: 0.282

The information below is about IL_8P9A_284

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_36931.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

23

Unit IDs

7OHR|1|1|G|1262
7OHR|1|1|A|1263
7OHR|1|1|G|1264
7OHR|1|1|U|1265
7OHR|1|1|G|1266
*
7OHR|1|1|C|1275
7OHR|1|1|U|1276
7OHR|1|1|C|1277

Current chains

Chain 1

25S rRNA

Nearby chains

Chain W

Ribosome assembly factor MRT4

Chain r

Ribosome biogenesis protein NSA2