IL_7OHV_010
3D structure
- PDB id
- 7OHV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL2 expression shut down, population C
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- UU*AGUG
- Length
- 6 nucleotides
- Bulged bases
- 7OHV|1|1|U|240
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7OHV_010 not in the Motif Atlas
- Geometric match to IL_4WF9_026
- Geometric discrepancy: 0.393
- The information below is about IL_4WF9_026
- Detailed Annotation
- Major groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_48076.8
- Basepair signature
- cWW-cSH-cWW
- Number of instances in this motif group
- 43
Unit IDs
7OHV|1|1|U|177
7OHV|1|1|U|178
*
7OHV|1|1|A|238
7OHV|1|1|G|239
7OHV|1|1|U|240
7OHV|1|1|G|241
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain L
- 60S ribosomal protein L13-A
- Chain h
- 60S ribosomal protein L35-A
- Chain j
- 60S ribosomal protein L37-A
- Chain v
- Nucleolar protein 16
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