IL_7OHV_049

3D structure

PDB id

7OHV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL2 expression shut down, population C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGA*UUUC

Length

7 nucleotides

Bulged bases

7OHV|1|1|U|1821

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OHV_049 not in the Motif Atlas

Geometric match to IL_4V9F_076

Geometric discrepancy: 0.3714

The information below is about IL_4V9F_076

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_87316.2

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

13

Unit IDs

7OHV|1|1|G|1623
7OHV|1|1|G|1624
7OHV|1|1|A|1625
*
7OHV|1|1|U|1819
7OHV|1|1|U|1820
7OHV|1|1|U|1821
7OHV|1|1|C|1822

Current chains

Chain 1

25S rRNA

Nearby chains

Chain m

Ribosome biogenesis protein ERB1

Chain n

Pescadillo homolog

Chain t

Ribosome biogenesis protein RLP7