IL_7OHV_056
3D structure
- PDB id
- 7OHV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL2 expression shut down, population C
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CGGAG*CGGGAUG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7OHV_056 not in the Motif Atlas
- Geometric match to IL_7EAG_004
- Geometric discrepancy: 0.3706
- The information below is about IL_7EAG_004
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_70923.5
- Basepair signature
- cWW-cWW-tSS-tSH-tHS-cWW-tHS
- Number of instances in this motif group
- 32
Unit IDs
7OHV|1|1|C|1711
7OHV|1|1|G|1712
7OHV|1|1|G|1713
7OHV|1|1|A|1714
7OHV|1|1|G|1718
*
7OHV|1|1|C|1726
7OHV|1|1|G|1727
7OHV|1|1|G|1728
7OHV|1|1|G|1730
7OHV|1|1|A|1731
7OHV|1|1|U|1732
7OHV|1|1|G|1733
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain R
- 60S ribosomal protein L19-A
- Chain Z
- 60S ribosomal protein L27-A
- Chain m
- Ribosome biogenesis protein ERB1
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