IL_7OHV_060

3D structure

PDB id

7OHV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL2 expression shut down, population C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UCAAG*CGACA

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OHV_060 not in the Motif Atlas

Homologous match to IL_8C3A_114

Geometric discrepancy: 0.3534

The information below is about IL_8C3A_114

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65585.1

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

7OHV|1|1|U|2835
7OHV|1|1|C|2836
7OHV|1|1|A|2837
7OHV|1|1|A|2838
7OHV|1|1|G|2839
*
7OHV|1|1|C|2849
7OHV|1|1|G|2850
7OHV|1|1|A|2851
7OHV|1|1|C|2852
7OHV|1|1|A|2853

Current chains

Chain 1

25S rRNA

Nearby chains

Chain b

Nucleolar GTP-binding protein 1

Chain r

Ribosome biogenesis protein NSA2