IL_7OHV_090
3D structure
- PDB id
- 7OHV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL2 expression shut down, population C
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- UGAACUU*AUCAAUAA
- Length
- 15 nucleotides
- Bulged bases
- 7OHV|1|1|A|49
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7OHV_090 not in the Motif Atlas
- Geometric match to IL_4V9F_006
- Geometric discrepancy: 0.2428
- The information below is about IL_4V9F_006
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_62167.3
- Basepair signature
- cWW-cWW-tSH-cSH-R-tWH-tHS-cWW
- Number of instances in this motif group
- 20
Unit IDs
7OHV|1|1|U|32
7OHV|1|1|G|33
7OHV|1|1|A|34
7OHV|1|1|A|35
7OHV|1|1|C|36
7OHV|1|1|U|37
7OHV|1|1|U|38
*
7OHV|1|1|A|45
7OHV|1|1|U|46
7OHV|1|1|C|47
7OHV|1|1|A|48
7OHV|1|1|A|49
7OHV|1|1|U|50
7OHV|1|1|A|51
7OHV|1|1|A|52
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain L
- 60S ribosomal protein L13-A
- Chain N
- 60S ribosomal protein L15-A
- Chain j
- 60S ribosomal protein L37-A
Coloring options: