IL_7OI0_022

3D structure

PDB id

7OI0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli delta rbfA pre-30S ribosomal subunit class D

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

GGAGG*CGUUAC

Length

11 nucleotides

Bulged bases

7OI0|1|A|U|485

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OI0_022 not in the Motif Atlas

Homologous match to IL_5J7L_022

Geometric discrepancy: 0.1214

The information below is about IL_5J7L_022

Detailed Annotation

tSH-tHW-tWW

Broad Annotation

No text annotation

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

7OI0|1|A|G|446
7OI0|1|A|G|447
7OI0|1|A|A|448
7OI0|1|A|G|449
7OI0|1|A|G|450
*
7OI0|1|A|C|483
7OI0|1|A|G|484
7OI0|1|A|U|485
7OI0|1|A|U|486
7OI0|1|A|A|487
7OI0|1|A|C|488

Current chains

Chain A

16S rRNA

Nearby chains

Chain D

30S ribosomal protein S4

Chain P

30S ribosomal protein S16