IL_7OIB_040

3D structure

PDB id

7OIB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 3D

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GCC*GC

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OIB_040 not in the Motif Atlas

Geometric match to IL_8P9A_367

Geometric discrepancy: 0.2963

The information below is about IL_8P9A_367

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

48

Unit IDs

7OIB|1|A|G|504
7OIB|1|A|C|505
7OIB|1|A|C|506
*
7OIB|1|A|G|515
7OIB|1|A|C|516

Current chains

Chain A

16S rRNA

Nearby chains

Chain J

39S ribosomal protein L11, mitochondrial

Chain N

39S ribosomal protein L16, mitochondrial