IL_7OID_035

3D structure

PDB id

7OID (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

ACG*CUAU

Length

7 nucleotides

Bulged bases

7OID|1|A|C|1048, 7OID|1|A|U|1430

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OID_035 not in the Motif Atlas

Geometric match to IL_5TBW_092

Geometric discrepancy: 0.3854

The information below is about IL_5TBW_092

Detailed Annotation

Major groove platform with intercalation

Broad Annotation

Major groove platform

Motif group

IL_54678.7

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

5

Unit IDs

7OID|1|A|A|1047
7OID|1|A|C|1048
7OID|1|A|G|1049
*
7OID|1|A|C|1429
7OID|1|A|U|1430
7OID|1|A|A|1431
7OID|1|A|U|1432

Current chains

Chain A

16S rRNA

Nearby chains

Chain 0

39S ribosomal protein L32, mitochondrial

Chain E

39S ribosomal protein L3, mitochondrial

Chain T

39S ribosomal protein L22, mitochondrial