IL_7OID_043

3D structure

PDB id

7OID (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GCAA*UAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OID_043 not in the Motif Atlas

Homologous match to IL_7RQB_093

Geometric discrepancy: 0.1531

The information below is about IL_7RQB_093

Detailed Annotation

Major groove platform with extra pair

Broad Annotation

Major groove platform

Motif group

IL_63450.2

Basepair signature

cWW-cWW-cSH-cWW

Number of instances in this motif group

8

Unit IDs

7OID|1|A|G|1273
7OID|1|A|C|1274
7OID|1|A|A|1275
7OID|1|A|A|1276
*
7OID|1|A|U|1310
7OID|1|A|A|1311
7OID|1|A|C|1312

Current chains

Chain A

16S rRNA

Nearby chains

Chain I

39S ribosomal protein L10, mitochondrial

Chain N

39S ribosomal protein L16, mitochondrial

Chain o

Ribosomal protein 63, mitochondrial