IL_7OID_047

3D structure

PDB id

7OID (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AUC*GUGAU

Length

8 nucleotides

Bulged bases

7OID|1|A|G|1393, 7OID|1|A|A|1394

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OID_047 not in the Motif Atlas

Geometric match to IL_7RQB_097

Geometric discrepancy: 0.1301

The information below is about IL_7RQB_097

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_90933.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

11

Unit IDs

7OID|1|A|A|1327
7OID|1|A|U|1328
7OID|1|A|C|1329
*
7OID|1|A|G|1391
7OID|1|A|U|1392
7OID|1|A|G|1393
7OID|1|A|A|1394
7OID|1|A|U|1395

Current chains

Chain A

16S rRNA

Nearby chains

Chain 0

39S ribosomal protein L32, mitochondrial

Chain E

39S ribosomal protein L3, mitochondrial