IL_7OID_059

3D structure

PDB id

7OID (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GUAGCUUAAAUUAUCAAAGCAAGGCACUGAAAAUGCCUAGAUG*CUCC

Length

47 nucleotides

Bulged bases

7OID|1|z|A|16, 7OID|1|z|U|17, 7OID|1|z|U|18, 7OID|1|z|C|31, 7OID|1|z|A|32, 7OID|1|z|C|33, 7OID|1|z|A|45

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7OID|1|z|G|7
7OID|1|z|U|8
7OID|1|z|A|9
7OID|1|z|G|10
7OID|1|z|C|11
7OID|1|z|U|12
7OID|1|z|U|13
7OID|1|z|A|14
7OID|1|z|A|15
7OID|1|z|A|16
7OID|1|z|U|17
7OID|1|z|U|18
7OID|1|z|A|19
7OID|1|z|U|20
7OID|1|z|C|21
7OID|1|z|A|22
7OID|1|z|A|23
7OID|1|z|A|24
7OID|1|z|G|25
7OID|1|z|C|26
7OID|1|z|A|27
7OID|1|z|A|28
7OID|1|z|G|29
7OID|1|z|G|30
7OID|1|z|C|31
7OID|1|z|A|32
7OID|1|z|C|33
7OID|1|z|U|34
7OID|1|z|G|35
7OID|1|z|A|36
7OID|1|z|A|37
7OID|1|z|A|38
7OID|1|z|A|39
7OID|1|z|U|40
7OID|1|z|G|41
7OID|1|z|C|42
7OID|1|z|C|43
7OID|1|z|U|44
7OID|1|z|A|45
7OID|1|z|G|46
7OID|1|z|A|47
7OID|1|z|U|48
7OID|1|z|G|49
*
7OID|1|z|C|60
7OID|1|z|U|61
7OID|1|z|C|62
7OID|1|z|C|63

Current chains

Chain z

mitochondrial tRNA

Nearby chains

Chain 1

39S ribosomal protein L33, mitochondrial

Chain q

Growth arrest and DNA damage-inducible proteins-interacting protein 1