3D structure

PDB id
7OIF (explore in PDB, NAKB, or RNA 3D Hub)
Description
CspA-27 cotranslational folding intermediate 2
Experimental method
ELECTRON MICROSCOPY
Resolution
3 Å

Loop

Sequence
UGAAGAAG*UGUAAAG
Length
15 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7OIF_130 not in the Motif Atlas
Homologous match to IL_5J7L_020
Geometric discrepancy: 0.0896
The information below is about IL_5J7L_020
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_28026.3
Basepair signature
cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW
Number of instances in this motif group
2

Unit IDs

7OIF|1|2|U|409
7OIF|1|2|G|410
7OIF|1|2|A|411
7OIF|1|2|A|412
7OIF|1|2|G|413
7OIF|1|2|A|414
7OIF|1|2|A|415
7OIF|1|2|G|416
*
7OIF|1|2|U|427
7OIF|1|2|G|428
7OIF|1|2|U|429
7OIF|1|2|A|430
7OIF|1|2|A|431
7OIF|1|2|A|432
7OIF|1|2|G|433

Current chains

Chain 2
16S rRNA

Nearby chains

Chain h
30S ribosomal protein S4

Coloring options:


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