IL_7OIG_045

3D structure

PDB id

7OIG (explore in PDB, NAKB, or RNA 3D Hub)

Description

CspA-27 cotranslational folding intermediate 3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AUAAGUAA*UGAAAUU

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OIG_045 not in the Motif Atlas

Homologous match to IL_5J7L_289

Geometric discrepancy: 0.069

The information below is about IL_5J7L_289

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.10

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

7OIG|1|1|A|1262
7OIG|1|1|U|1263
7OIG|1|1|A|1264
7OIG|1|1|A|1265
7OIG|1|1|G|1266
7OIG|1|1|U|1267
7OIG|1|1|A|1268
7OIG|1|1|A|1269
*
7OIG|1|1|U|2011
7OIG|1|1|G|2012
7OIG|1|1|A|2013
7OIG|1|1|A|2014
7OIG|1|1|A|2015
7OIG|1|1|U|2016
7OIG|1|1|U|2017

Current chains

Chain 1

23S rRNA

Nearby chains

Chain B

CspA transcriptional activator

Chain E

50S ribosomal protein L4

Chain R

50S ribosomal protein L22

Chain a

50S ribosomal protein L32