IL_7OIG_148

3D structure

PDB id

7OIG (explore in PDB, NAKB, or RNA 3D Hub)

Description

CspA-27 cotranslational folding intermediate 3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAAAC*GGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OIG_148 not in the Motif Atlas

Homologous match to IL_5J7L_037

Geometric discrepancy: 0.0846

The information below is about IL_5J7L_037

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.7

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

7OIG|1|2|C|779
7OIG|1|2|A|780
7OIG|1|2|A|781
7OIG|1|2|A|782
7OIG|1|2|C|783
*
7OIG|1|2|G|799
7OIG|1|2|G|800
7OIG|1|2|U|801
7OIG|1|2|A|802
7OIG|1|2|G|803

Current chains

Chain 2

16S rRNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain o

30S ribosomal protein S11

Chain y

30S ribosomal protein S21