3D structure

PDB id
7OII (explore in PDB, NAKB, or RNA 3D Hub)
Description
CspA-70 cotranslational folding intermediate 2
Experimental method
ELECTRON MICROSCOPY
Resolution
3 Å

Loop

Sequence
GAAC*GAGUGAAAAAGAAC
Length
18 nucleotides
Bulged bases
7OII|1|1|A|504, 7OII|1|1|A|508
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7OII_011 not in the Motif Atlas
Geometric match to IL_5J7L_255
Geometric discrepancy: 0.0583
The information below is about IL_5J7L_255
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_81516.2
Basepair signature
cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L
Number of instances in this motif group
6

Unit IDs

7OII|1|1|G|481
7OII|1|1|A|482
7OII|1|1|A|483
7OII|1|1|C|484
*
7OII|1|1|G|496
7OII|1|1|A|497
7OII|1|1|G|498
7OII|1|1|U|499
7OII|1|1|G|500
7OII|1|1|A|501
7OII|1|1|A|502
7OII|1|1|A|503
7OII|1|1|A|504
7OII|1|1|A|505
7OII|1|1|G|506
7OII|1|1|A|507
7OII|1|1|A|508
7OII|1|1|C|509

Current chains

Chain 1
23S rRNA

Nearby chains

Chain B
Cold-shock DNA-binding protein family
Chain R
50S ribosomal protein L22
Chain T
50S ribosomal protein L24

Coloring options:


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