3D structure

PDB id
7OII (explore in PDB, NAKB, or RNA 3D Hub)
Description
CspA-70 cotranslational folding intermediate 2
Experimental method
ELECTRON MICROSCOPY
Resolution
3 Å

Loop

Sequence
GU(5MC)AC*GAAGUC
Length
11 nucleotides
Bulged bases
7OII|1|2|A|1493
QA status
Modified nucleotides: 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7OII_170 not in the Motif Atlas
Homologous match to IL_6CZR_167
Geometric discrepancy: 0.415
The information below is about IL_6CZR_167
Detailed Annotation
Partly complementary
Broad Annotation
Partly complementary
Motif group
IL_49751.3
Basepair signature
cWW-cWW-cWW-cWW-cWW
Number of instances in this motif group
18

Unit IDs

7OII|1|2|G|1405
7OII|1|2|U|1406
7OII|1|2|5MC|1407
7OII|1|2|A|1408
7OII|1|2|C|1409
*
7OII|1|2|G|1491
7OII|1|2|A|1492
7OII|1|2|A|1493
7OII|1|2|G|1494
7OII|1|2|U|1495
7OII|1|2|C|1496

Current chains

Chain 2
16S rRNA

Nearby chains

Chain 1
Large subunit ribosomal RNA; LSU rRNA
Chain p
30S ribosomal protein S12
Chain z
Transfer RNA; tRNA

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