3D structure

PDB id
7OII (explore in PDB, NAKB, or RNA 3D Hub)
Description
CspA-70 cotranslational folding intermediate 2
Experimental method
ELECTRON MICROSCOPY
Resolution
3 Å

Loop

Sequence
GGAACUAGG*CUGUC
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7OII_186 not in the Motif Atlas
Homologous match to IL_4WF9_117
Geometric discrepancy: 0.0739
The information below is about IL_4WF9_117
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_22854.4
Basepair signature
cWW-tSH-cWW-tHW-R-L-cWW-L-L-R
Number of instances in this motif group
7

Unit IDs

7OII|1|1|G|1666
7OII|1|1|G|1667
7OII|1|1|A|1668
7OII|1|1|A|1669
7OII|1|1|C|1670
7OII|1|1|U|1671
7OII|1|1|A|1672
7OII|1|1|G|1673
7OII|1|1|G|1674
*
7OII|1|1|C|1990
7OII|1|1|U|1991
7OII|1|1|G|1992
7OII|1|1|U|1993
7OII|1|1|C|1994

Current chains

Chain 1
23S rRNA

Nearby chains

Chain D
50S ribosomal protein L3
Chain J
50S ribosomal protein L14

Coloring options:


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