3D structure

PDB id
7OIZ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of 70S ribosome stalled with TnaC peptide
Experimental method
ELECTRON MICROSCOPY
Resolution
2.9 Å

Loop

Sequence
UGAAGAAG*UGUAAAG
Length
15 nucleotides
Bulged bases
None detected
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7OIZ_019 not in the Motif Atlas
Homologous match to IL_5J7L_020
Geometric discrepancy: 0.166
The information below is about IL_5J7L_020
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_28026.3
Basepair signature
cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW
Number of instances in this motif group
2

Unit IDs

7OIZ|1|A|U|409
7OIZ|1|A|G|410
7OIZ|1|A|A|411
7OIZ|1|A|A|412
7OIZ|1|A|G|413
7OIZ|1|A|A|414
7OIZ|1|A|A|415
7OIZ|1|A|G|416
*
7OIZ|1|A|U|427
7OIZ|1|A|G|428
7OIZ|1|A|U|429
7OIZ|1|A|A|430
7OIZ|1|A|A|431
7OIZ|1|A|A|432
7OIZ|1|A|G|433

Current chains

Chain A
16S rRNA

Nearby chains

Chain D
30S ribosomal protein S4

Coloring options:


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