IL_7OIZ_025

3D structure

PDB id

7OIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 70S ribosome stalled with TnaC peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGUAAAG*CG

Length

9 nucleotides

Bulged bases

7OIZ|1|A|A|572

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OIZ_025 not in the Motif Atlas

Homologous match to IL_5J7L_026

Geometric discrepancy: 0.0882

The information below is about IL_5J7L_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.6

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

4

Unit IDs

7OIZ|1|A|C|569
7OIZ|1|A|G|570
7OIZ|1|A|U|571
7OIZ|1|A|A|572
7OIZ|1|A|A|573
7OIZ|1|A|A|574
7OIZ|1|A|G|575
*
7OIZ|1|A|C|880
7OIZ|1|A|G|881

Current chains

Chain A

16S rRNA

Nearby chains

Chain H

30S ribosomal protein S8

Chain L

30S ribosomal protein S12

Chain Q

30S ribosomal protein S17