IL_7OIZ_127

3D structure

PDB id

7OIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 70S ribosome stalled with TnaC peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UAUGUAG*UGAAA

Length

12 nucleotides

Bulged bases

7OIZ|1|a|U|1714

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OIZ_127 not in the Motif Atlas

Homologous match to IL_5J7L_309

Geometric discrepancy: 0.1025

The information below is about IL_5J7L_309

Detailed Annotation

6x5 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

7OIZ|1|a|U|1712
7OIZ|1|a|A|1713
7OIZ|1|a|U|1714
7OIZ|1|a|G|1715
7OIZ|1|a|U|1716
7OIZ|1|a|A|1717
7OIZ|1|a|G|1718
*
7OIZ|1|a|U|1742
7OIZ|1|a|G|1743
7OIZ|1|a|A|1744
7OIZ|1|a|A|1745
7OIZ|1|a|A|1746

Current chains

Chain a

23S rRNA

Nearby chains