IL_7OIZ_177

3D structure

PDB id

7OIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 70S ribosome stalled with TnaC peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

(5MC)AC*GAAG

Length

7 nucleotides

Bulged bases

7OIZ|1|A|A|1492, 7OIZ|1|A|A|1493

QA status

Modified nucleotides: 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OIZ_177 not in the Motif Atlas

Homologous match to IL_4LFB_070

Geometric discrepancy: 0.436

The information below is about IL_4LFB_070

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_29925.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

10

Unit IDs

7OIZ|1|A|5MC|1407
7OIZ|1|A|A|1408
7OIZ|1|A|C|1409
*
7OIZ|1|A|G|1491
7OIZ|1|A|A|1492
7OIZ|1|A|A|1493
7OIZ|1|A|G|1494

Current chains

Chain A

16S rRNA

Nearby chains

Chain L

30S ribosomal protein S12

Chain X

mRNA

Chain a

Large subunit ribosomal RNA; LSU rRNA