IL_7OJ0_019

3D structure

PDB id

7OJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 70S ribosome stalled with TnaC peptide and RF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OJ0_019 not in the Motif Atlas

Homologous match to IL_5J7L_020

Geometric discrepancy: 0.1854

The information below is about IL_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

7OJ0|1|A|U|409
7OJ0|1|A|G|410
7OJ0|1|A|A|411
7OJ0|1|A|A|412
7OJ0|1|A|G|413
7OJ0|1|A|A|414
7OJ0|1|A|A|415
7OJ0|1|A|G|416
*
7OJ0|1|A|U|427
7OJ0|1|A|G|428
7OJ0|1|A|U|429
7OJ0|1|A|A|430
7OJ0|1|A|A|431
7OJ0|1|A|A|432
7OJ0|1|A|G|433

Current chains

Chain A

16S rRNA

Nearby chains

Chain D

30S ribosomal protein S4