IL_7OJ0_023
3D structure
- PDB id
- 7OJ0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 70S ribosome stalled with TnaC peptide and RF2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CGGCUAAC*GG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7OJ0_023 not in the Motif Atlas
- Homologous match to IL_5J7L_024
- Geometric discrepancy: 0.0772
- The information below is about IL_5J7L_024
- Detailed Annotation
- SSU/LSU pseudoknot
- Broad Annotation
- No text annotation
- Motif group
- IL_41203.4
- Basepair signature
- cWW-L-cWW-L-L-R-cSH
- Number of instances in this motif group
- 11
Unit IDs
7OJ0|1|A|C|504
7OJ0|1|A|G|505
7OJ0|1|A|G|506
7OJ0|1|A|C|507
7OJ0|1|A|U|508
7OJ0|1|A|A|509
7OJ0|1|A|A|510
7OJ0|1|A|C|511
*
7OJ0|1|A|G|540
7OJ0|1|A|G|541
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain 6
- Alternative ribosome-rescue factor A
- Chain D
- 30S ribosomal protein S4
- Chain L
- 30S ribosomal protein S12
Coloring options: