3D structure

PDB id
7OJ0 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of 70S ribosome stalled with TnaC peptide and RF2
Experimental method
ELECTRON MICROSCOPY
Resolution
3.5 Å

Loop

Sequence
GGAACUG*CUAAGUAC
Length
15 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7OJ0_070 not in the Motif Atlas
Geometric match to IL_7RQB_006
Geometric discrepancy: 0.0708
The information below is about IL_7RQB_006
Detailed Annotation
8x7 Sarcin-Ricin; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_04346.7
Basepair signature
cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
Number of instances in this motif group
15

Unit IDs

7OJ0|1|a|G|188
7OJ0|1|a|G|189
7OJ0|1|a|A|190
7OJ0|1|a|A|191
7OJ0|1|a|C|192
7OJ0|1|a|U|193
7OJ0|1|a|G|194
*
7OJ0|1|a|C|201
7OJ0|1|a|U|202
7OJ0|1|a|A|203
7OJ0|1|a|A|204
7OJ0|1|a|G|205
7OJ0|1|a|U|206
7OJ0|1|a|A|207
7OJ0|1|a|C|208

Current chains

Chain a
23S rRNA

Nearby chains

Chain 2
50S ribosomal protein L35
Chain k
50S ribosomal protein L15
Chain w
50S ribosomal protein L28

Coloring options:


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