IL_7OJ0_097

3D structure

PDB id

7OJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 70S ribosome stalled with TnaC peptide and RF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UCCCAAAG*CA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OJ0_097 not in the Motif Atlas

Geometric match to IL_4WF9_037

Geometric discrepancy: 0.0743

The information below is about IL_4WF9_037

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.4

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

11

Unit IDs

7OJ0|1|a|U|1004
7OJ0|1|a|C|1005
7OJ0|1|a|C|1006
7OJ0|1|a|C|1007
7OJ0|1|a|A|1008
7OJ0|1|a|A|1009
7OJ0|1|a|A|1010
7OJ0|1|a|G|1011
*
7OJ0|1|a|C|1150
7OJ0|1|a|A|1151

Current chains

Chain a

23S rRNA

Nearby chains

Chain i

50S ribosomal protein L13

Chain p

50S ribosomal protein L20