IL_7OJ0_101

3D structure

PDB id

7OJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 70S ribosome stalled with TnaC peptide and RF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GAUG*CGC

Length

7 nucleotides

Bulged bases

7OJ0|1|a|U|1033

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OJ0_101 not in the Motif Atlas

Homologous match to IL_7RQB_041

Geometric discrepancy: 0.0991

The information below is about IL_7RQB_041

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_43275.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

30

Unit IDs

7OJ0|1|a|G|1031
7OJ0|1|a|A|1032
7OJ0|1|a|U|1033
7OJ0|1|a|G|1034
*
7OJ0|1|a|C|1121
7OJ0|1|a|G|1122
7OJ0|1|a|C|1123

Current chains

Chain a

23S rRNA

Nearby chains

Chain 3

50S ribosomal protein L36

Chain b

5S ribosomal RNA; 5S rRNA

Chain l

50S ribosomal protein L16