IL_7OJ0_128

3D structure

PDB id

7OJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 70S ribosome stalled with TnaC peptide and RF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

7OJ0|1|a|G|1699

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OJ0_128 not in the Motif Atlas

Homologous match to IL_5J7L_308

Geometric discrepancy: 0.0823

The information below is about IL_5J7L_308

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_47346.2

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

7OJ0|1|a|C|1686
7OJ0|1|a|G|1687
7OJ0|1|a|U|1688
7OJ0|1|a|A|1689
7OJ0|1|a|A|1690
7OJ0|1|a|C|1691
*
7OJ0|1|a|G|1696
7OJ0|1|a|G|1697
7OJ0|1|a|A|1698
7OJ0|1|a|G|1699
7OJ0|1|a|A|1700
7OJ0|1|a|A|1701
7OJ0|1|a|G|1702

Current chains

Chain a

23S rRNA

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain c

50S ribosomal protein L2