IL_7OJ0_129

3D structure

PDB id

7OJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 70S ribosome stalled with TnaC peptide and RF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UAUGUAG*UGAAA

Length

12 nucleotides

Bulged bases

7OJ0|1|a|U|1714

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OJ0_129 not in the Motif Atlas

Homologous match to IL_5J7L_309

Geometric discrepancy: 0.1093

The information below is about IL_5J7L_309

Detailed Annotation

6x5 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

7OJ0|1|a|U|1712
7OJ0|1|a|A|1713
7OJ0|1|a|U|1714
7OJ0|1|a|G|1715
7OJ0|1|a|U|1716
7OJ0|1|a|A|1717
7OJ0|1|a|G|1718
*
7OJ0|1|a|U|1742
7OJ0|1|a|G|1743
7OJ0|1|a|A|1744
7OJ0|1|a|A|1745
7OJ0|1|a|A|1746

Current chains

Chain a

23S rRNA

Nearby chains