3D structure

PDB id
7OJ0 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of 70S ribosome stalled with TnaC peptide and RF2
Experimental method
ELECTRON MICROSCOPY
Resolution
3.5 Å

Loop

Sequence
GU(5MC)*GUC
Length
6 nucleotides
Bulged bases
None detected
QA status
Modified nucleotides: 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7OJ0_190 not in the Motif Atlas
Homologous match to IL_5J7L_363
Geometric discrepancy: 0.1354
The information below is about IL_5J7L_363
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_87907.2
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
179

Unit IDs

7OJ0|1|A|G|1405
7OJ0|1|A|U|1406
7OJ0|1|A|5MC|1407
*
7OJ0|1|A|G|1494
7OJ0|1|A|U|1495
7OJ0|1|A|C|1496

Current chains

Chain A
16S rRNA

Nearby chains

Chain 6
Alternative ribosome-rescue factor A
Chain 8
Peptide chain release factor RF2
Chain V
Transfer RNA; tRNA
Chain X
mRNA
Chain a
Large subunit ribosomal RNA; LSU rRNA

Coloring options:


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