IL_7OLC_003

3D structure

PDB id

7OLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at idle POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AUC*GU

Length

5 nucleotides

Bulged bases

7OLC|1|1|U|15

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OLC_003 not in the Motif Atlas

Homologous match to IL_8C3A_003

Geometric discrepancy: 0.1877

The information below is about IL_8C3A_003

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

7OLC|1|1|A|14
7OLC|1|1|U|15
7OLC|1|1|C|16
*
7OLC|1|4|G|144
7OLC|1|4|U|145

Current chains

Chain 1

26S rRNA

Chain 4

5.8S rRNA

Nearby chains

Chain LG

60S ribosomal protein L8

Chain LN

Ribosomal protein L15

Chain LX

60S ribosomal protein L25-like protein