IL_7OLC_007

3D structure

PDB id

7OLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at idle POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AG*CGUUGU

Length

8 nucleotides

Bulged bases

7OLC|1|1|U|143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OLC_007 not in the Motif Atlas

Geometric match to IL_5TBW_007

Geometric discrepancy: 0.1801

The information below is about IL_5TBW_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_19724.3

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

4

Unit IDs

7OLC|1|1|A|124
7OLC|1|1|G|125
*
7OLC|1|1|C|140
7OLC|1|1|G|141
7OLC|1|1|U|142
7OLC|1|1|U|143
7OLC|1|1|G|144
7OLC|1|1|U|145

Current chains

Chain 1

26S rRNA

Nearby chains

Chain 4

5.8S ribosomal RNA; 5.8S rRNA

Chain LG

60S ribosomal protein L8

Chain LN

Ribosomal protein L15