IL_7OLC_012

3D structure

PDB id

7OLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at idle POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGAG*CAAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OLC_012 not in the Motif Atlas

Geometric match to IL_4LFB_060

Geometric discrepancy: 0.1461

The information below is about IL_4LFB_060

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.2

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

43

Unit IDs

7OLC|1|1|C|168
7OLC|1|1|G|169
7OLC|1|1|A|170
7OLC|1|1|G|171
*
7OLC|1|1|C|235
7OLC|1|1|A|236
7OLC|1|1|A|237
7OLC|1|1|G|238

Current chains

Chain 1

26S rRNA

Nearby chains

Chain LL

60S ribosomal protein L13

Chain Lh

Dolichyl-diphosphooligosaccharide--protein glycotransferase