IL_7OLC_029

3D structure

PDB id

7OLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at idle POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUGAUG*CGGAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OLC_029 not in the Motif Atlas

Geometric match to IL_5TBW_026

Geometric discrepancy: 0.1196

The information below is about IL_5TBW_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

7OLC|1|1|C|740
7OLC|1|1|U|741
7OLC|1|1|G|742
7OLC|1|1|A|743
7OLC|1|1|U|744
7OLC|1|1|G|745
*
7OLC|1|1|C|750
7OLC|1|1|G|751
7OLC|1|1|G|752
7OLC|1|1|A|753
7OLC|1|1|U|754
7OLC|1|1|G|755

Current chains

Chain 1

26S rRNA

Nearby chains

Chain LL

60S ribosomal protein L13

Chain La

60S ribosomal protein L28-like protein

Chain Lo

60S ribosomal protein L44-like protein