IL_7OLC_045

3D structure

PDB id

7OLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at idle POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AGG*CAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OLC_045 not in the Motif Atlas

Geometric match to IL_5TBW_127

Geometric discrepancy: 0.1647

The information below is about IL_5TBW_127

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

7OLC|1|1|A|991
7OLC|1|1|G|992
7OLC|1|1|G|993
*
7OLC|1|1|C|1022
7OLC|1|1|A|1023
7OLC|1|1|U|1024

Current chains

Chain 1

26S rRNA

Nearby chains

Chain 3

5S ribosomal RNA; 5S rRNA

Chain LD

60S ribosomal protein l5-like protein

Chain LI

60S ribosomal protein L10-like protein