IL_7OLC_057

3D structure

PDB id

7OLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at idle POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUGGC*GAAUC

Length

10 nucleotides

Bulged bases

7OLC|1|1|G|1219

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OLC_057 not in the Motif Atlas

Homologous match to IL_8C3A_058

Geometric discrepancy: 0.5125

The information below is about IL_8C3A_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_30542.5

Basepair signature

cWW-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

7OLC|1|1|G|1217
7OLC|1|1|U|1218
7OLC|1|1|G|1219
7OLC|1|1|G|1220
7OLC|1|1|C|1221
*
7OLC|1|1|G|1233
7OLC|1|1|A|1234
7OLC|1|1|A|1235
7OLC|1|1|U|1236
7OLC|1|1|C|1237

Current chains

Chain 1

26S rRNA

Nearby chains

Chain LK

60S ribosomal protein L12-like protein