IL_7OLC_090

3D structure

PDB id

7OLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at idle POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGC*GUAAA

Length

8 nucleotides

Bulged bases

7OLC|1|1|A|2205, 7OLC|1|1|A|2206

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OLC_090 not in the Motif Atlas

Geometric match to IL_5ML7_010

Geometric discrepancy: 0.1999

The information below is about IL_5ML7_010

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_68118.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

29

Unit IDs

7OLC|1|1|U|2163
7OLC|1|1|G|2164
7OLC|1|1|C|2165
*
7OLC|1|1|G|2203
7OLC|1|1|U|2204
7OLC|1|1|A|2205
7OLC|1|1|A|2206
7OLC|1|1|A|2207

Current chains

Chain 1

26S rRNA

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain LA

60S ribosomal protein L2-like protein