IL_7OLC_101

3D structure

PDB id

7OLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at idle POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AUA*UAUU

Length

7 nucleotides

Bulged bases

7OLC|1|1|U|2464

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OLC_101 not in the Motif Atlas

Geometric match to IL_5C5W_002

Geometric discrepancy: 0.1743

The information below is about IL_5C5W_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

7OLC|1|1|A|2408
7OLC|1|1|U|2409
7OLC|1|1|A|2410
*
7OLC|1|1|U|2462
7OLC|1|1|A|2463
7OLC|1|1|U|2464
7OLC|1|1|U|2465

Current chains

Chain 1

26S rRNA

Nearby chains

Chain Li

60S ribosomal protein L36