IL_7OLC_112

3D structure

PDB id

7OLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at idle POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCAAG*CGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OLC_112 not in the Motif Atlas

Homologous match to IL_8C3A_114

Geometric discrepancy: 0.1458

The information below is about IL_8C3A_114

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65585.1

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

7OLC|1|1|C|2794
7OLC|1|1|C|2795
7OLC|1|1|A|2796
7OLC|1|1|A|2797
7OLC|1|1|G|2798
*
7OLC|1|1|C|2808
7OLC|1|1|G|2809
7OLC|1|1|A|2810
7OLC|1|1|C|2811
7OLC|1|1|G|2812

Current chains

Chain 1

26S rRNA

Nearby chains

Chain LI

60S ribosomal protein L10-like protein

Chain Lm

Ubiquitin